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b3galt6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108255271, updated on 20-Aug-2024

Summary

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Gene symbol
b3galt6
Gene description
UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6
See related
EnsemblRapid:ENSIPUG00020009106
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See b3galt6 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 21 NC_030436.2 (14809964..14815340, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 21 NC_030436.1 (6191602..6193701)

Chromosome 21 - NC_030436.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 14b Neighboring gene U6 spliceosomal RNA Neighboring gene protein FAM107B Neighboring gene transmembrane protein 167B Neighboring gene homeodomain interacting protein kinase 1b Neighboring gene ubiquitin conjugating enzyme E2 J2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosaminoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030436.2 Reference Coco_2.0 Primary Assembly

    Range
    14809964..14815340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017451108.3 → XP_017306597.2  beta-1,3-galactosyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A2D0PKP9

  2. XM_053674047.1 → XP_053530022.1  beta-1,3-galactosyltransferase 6 isoform X2

    UniProtKB/TrEMBL
    A0A9F7R768
    Related
    ENSIPUP00020016252.1, ENSIPUT00020019808.1
Nucleotide Protein
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