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LOC108254972 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108254972, updated on 20-Aug-2024

Summary

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Gene symbol
LOC108254972
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6
See related
EnsemblRapid:ENSIPUG00020024541
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
hs3st6
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Genomic context

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See LOC108254972 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 2 NC_030417.2 (27116681..27135766, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 2 NC_030417.1 (12345604..12364532)

Chromosome 2 - NC_030417.2Genomic Context describing neighboring genes Neighboring gene hydroxyacylglutathione hydrolase, mitochondrial Neighboring gene hydroxyacylglutathione hydrolase Neighboring gene fumarylacetoacetate hydrolase domain containing 1 Neighboring gene methionine sulfoxide reductase B1a Neighboring gene testis-expressed protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6
Names
heparan sulfate-glucosamine 3-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030417.2 Reference Coco_2.0 Primary Assembly

    Range
    27116681..27135766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017450519.3 → XP_017306008.1  heparan sulfate glucosamine 3-O-sulfotransferase 6

    UniProtKB/TrEMBL
    A0A2D0PHT5
    Related
    ENSIPUP00020047385.1, ENSIPUT00020058975.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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