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LOC108254710 transforming protein RhoA [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108254710, updated on 20-Aug-2024

Summary

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Gene symbol
LOC108254710
Gene description
transforming protein RhoA
See related
EnsemblRapid:ENSIPUG00020002956
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
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Genomic context

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See LOC108254710 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 21 NC_030436.2 (20676818..20682049)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 21 NC_030436.1 (682768..688002, complement)

Chromosome 21 - NC_030436.2Genomic Context describing neighboring genes Neighboring gene olfactory receptor class A-like protein 1 Neighboring gene olfactory receptor class A-like protein 1 Neighboring gene transmembrane protein 43 Neighboring gene uncharacterized LOC108254706 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cleavage furrow IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming protein RhoA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030436.2 Reference Coco_2.0 Primary Assembly

    Range
    20676818..20682049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017449960.3 → XP_017305449.1  transforming protein RhoA

    UniProtKB/TrEMBL
    A0A2D0PHZ6
    Related
    ENSIPUP00020005614.1, ENSIPUT00020006377.1
Nucleotide Protein
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