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chrne cholinergic receptor, nicotinic, epsilon [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108248282, updated on 10-Apr-2024

Summary

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Gene symbol
chrne
Gene description
cholinergic receptor, nicotinic, epsilon
See related
EnsemblRapid:ENSKMAG00010023344
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
zebrafish all
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Genomic context

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See chrne in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
12
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG13 NC_051442.1 (15038394..15049224, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094571.1 (232538..243365)

Linkage Group LG13 - NC_051442.1Genomic Context describing neighboring genes Neighboring gene phospholipase D1-like Neighboring gene phospholipase D1-like Neighboring gene glycolipid transfer protein domain containing 2b Neighboring gene ATPase Na+/K+ transporting subunit beta 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051442.1 Reference ASM164957v2 Primary Assembly

    Range
    15038394..15049224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017436957.3 → XP_017292446.1  acetylcholine receptor subunit epsilon

    UniProtKB/TrEMBL
    A0A3Q3AP05
    Related
    ENSKMAP00010049731.1, ENSKMAT00010053242.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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