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sgca sarcoglycan, alpha [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108248239, updated on 10-Apr-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSKMAG00010003723
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
11
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG17 NC_051446.1 (23039231..23045077)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094244.1 (1444623..1450448, complement)

Linkage Group LG17 - NC_051446.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9 Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051446.1 Reference ASM164957v2 Primary Assembly

    Range
    23039231..23045077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017436872.3 → XP_017292361.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3Q3FB49
    Related
    ENSKMAP00010007411.1, ENSKMAT00010007792.1

  2. XM_017436892.3 → XP_017292381.1  alpha-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A3Q3FB49

  3. XM_017436881.3 → XP_017292370.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3Q3FB49
    Related
    ENSKMAP00010007404.1, ENSKMAT00010007785.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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