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mrps18a mitochondrial ribosomal protein S18A [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108247666, updated on 10-Apr-2024

Summary

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Gene symbol
mrps18a
Gene description
mitochondrial ribosomal protein S18A
See related
EnsemblRapid:ENSKMAG00010009016
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See mrps18a in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
6
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG19 NC_051448.1 (13200236..13205210)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094525.1 (200209..205178, complement)

Linkage Group LG19 - NC_051448.1Genomic Context describing neighboring genes Neighboring gene N-acetylgalactosaminidase, alpha Neighboring gene vascular endothelial growth factor Ab Neighboring gene radial spoke head component 9 Neighboring gene transmembrane protein 63A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
39S ribosomal protein S18a, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051448.1 Reference ASM164957v2 Primary Assembly

    Range
    13200236..13205210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017435977.3 → XP_017291466.1  39S ribosomal protein S18a, mitochondrial

    UniProtKB/TrEMBL
    A0A3Q3AU27
    Related
    ENSKMAP00010019449.1, ENSKMAT00010020270.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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