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trmt2b tRNA methyltransferase 2 homolog B [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108245769, updated on 10-Apr-2024

Summary

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Gene symbol
trmt2b
Gene description
tRNA methyltransferase 2 homolog B
See related
EnsemblRapid:ENSKMAG00010016553
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See trmt2b in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
2
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG22 NC_051451.1 (14640190..14643262)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094243.1 (3192663..3195706)

Linkage Group LG22 - NC_051451.1Genomic Context describing neighboring genes Neighboring gene girdin Neighboring gene uncharacterized LOC119616682 Neighboring gene polyribonucleotide nucleotidyltransferase 1, mitochondrial Neighboring gene stearoyl-CoA desaturase b Neighboring gene wingless-type MMTV integration site family, member 8b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (uracil(54)-C(5))-methyltransferase homolog-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051451.1 Reference ASM164957v2 Primary Assembly

    Range
    14640190..14643262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017432954.3 → XP_017288443.1  tRNA (uracil(54)-C(5))-methyltransferase homolog-B isoform X2

    UniProtKB/TrEMBL
    A0A3Q3B3K7
    Related
    ENSKMAP00010036387.1, ENSKMAT00010038001.1

  2. XM_037973665.1 → XP_037829593.1  tRNA (uracil(54)-C(5))-methyltransferase homolog-B isoform X1

    Related
    ENSKMAP00010036390.1, ENSKMAT00010038004.1
    Conserved Domains (1) summary
    cl17173
    Location:78 → 495
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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