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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108245653, updated on 10-Apr-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSKMAG00010015850
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
11
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG13 NC_051442.1 (1268657..1471544)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094421.1 (565491..785015)

Linkage Group LG13 - NC_051442.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC112451190 Neighboring gene uncharacterized LOC119617602 Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051442.1 Reference ASM164957v2 Primary Assembly

    Range
    1268657..1471544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017432744.3 → XP_017288233.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3Q3ESM3
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_017432743.3 → XP_017288232.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZMA6
    Related
    ENSKMAP00010034704.1, ENSKMAT00010036201.1
Nucleotide Protein
Heading Accession and Version

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