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kptn kaptin (actin binding protein) [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108243094, updated on 10-Apr-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
See related
EnsemblRapid:ENSKMAG00010018582
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
12
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG2 NC_051431.1 (9279981..9291138)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094350.1 (774327..786318)

Linkage Group LG2 - NC_051431.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin-like protein 2 Neighboring gene homeobox protein otx5-like Neighboring gene H3 histone, family 3C Neighboring gene uncharacterized LOC108243110 Neighboring gene uncharacterized LOC112450961 Neighboring gene uncharacterized LOC108243097

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051431.1 Reference ASM164957v2 Primary Assembly

    Range
    9279981..9291138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017428319.3 → XP_017283808.1  KICSTOR complex protein kaptin

    UniProtKB/TrEMBL
    A0A3Q3ARI6
    Related
    ENSKMAP00010040540.1, ENSKMAT00010042623.1
Nucleotide Protein
Heading Accession and Version

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