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kirrel1a kirre like nephrin family adhesion molecule 1a [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108239399, updated on 10-Apr-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
EnsemblRapid:ENSKMAG00010010787
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
15
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG7 NC_051436.1 (17880513..17930644)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094303.1 (2364609..2414725, complement)

Linkage Group LG7 - NC_051436.1Genomic Context describing neighboring genes Neighboring gene interleukin-13 receptor subunit alpha-2-like Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1a
Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051436.1 Reference ASM164957v2 Primary Assembly

    Range
    17880513..17930644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017422088.2 → XP_017277577.1  kin of IRRE-like protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZRS6
    Related
    ENSKMAP00010023320.1, ENSKMAT00010024384.1

  2. XM_017422091.2 → XP_017277580.1  kin of IRRE-like protein 1a isoform X3

    UniProtKB/TrEMBL
    A0A3Q2ZPQ7, A0A3Q2ZRS6
    Related
    ENSKMAP00010023303.1, ENSKMAT00010024367.1

  3. XM_017422090.2 → XP_017277579.1  kin of IRRE-like protein 1a isoform X2

    UniProtKB/TrEMBL
    A0A3Q2ZRS6
Nucleotide Protein
Heading Accession and Version

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