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trit1 tRNA isopentenyltransferase 1 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108238688, updated on 10-Apr-2024

Summary

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Gene symbol
trit1
Gene description
tRNA isopentenyltransferase 1
See related
EnsemblRapid:ENSKMAG00010013206
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See trit1 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
11
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG5 NC_051434.1 (16350413..16392052)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094296.1 (208095..249715)

Linkage Group LG5 - NC_051434.1Genomic Context describing neighboring genes Neighboring gene MFSD2 lysolipid transporter A, lysophospholipid b Neighboring gene MYCL proto-oncogene, bHLH transcription factor b Neighboring gene family with sequence similarity 49 member A, like Neighboring gene thioredoxin-like 4A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA dimethylallyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA dimethylallyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051434.1 Reference ASM164957v2 Primary Assembly

    Range
    16350413..16392052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017420945.3 → XP_017276434.1  tRNA dimethylallyltransferase

    UniProtKB/TrEMBL
    A0A3Q3H1R9
    Related
    ENSKMAP00010028683.1, ENSKMAT00010029924.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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