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kirrel3b kirre like nephrin family adhesion molecule 3b [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108238183, updated on 10-Apr-2024

Summary

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Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
See related
EnsemblRapid:ENSKMAG00010003994
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Also known as
kirrel3
Orthologs
zebrafish all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
17
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG2 NC_051431.1 (20604901..20808336, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094291.1 (1652997..1856430, complement)

Linkage Group LG2 - NC_051431.1Genomic Context describing neighboring genes Neighboring gene BARX homeobox 2 Neighboring gene RNA binding motif protein 7 Neighboring gene somatolactin alpha Neighboring gene v-ets avian erythroblastosis virus E26 oncogene homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3
kirre like nephrin family adhesion molecule 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051431.1 Reference ASM164957v2 Primary Assembly

    Range
    20604901..20808336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017420109.3 → XP_017275598.1  kin of IRRE-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2ZIP3
    Related
    ENSKMAP00010008231.1, ENSKMAT00010008612.1

  2. XM_025006780.2 → XP_024862548.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2ZG90
    Conserved Domains (5) summary
    cd05759
    Location:134 → 215
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:387 → 484
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:23 → 112
    IG_like; Immunoglobulin like
    pfam13895
    Location:223 → 300
    Ig_2; Immunoglobulin domain
    cl28434
    Location:304 → 385
    I-set; Immunoglobulin I-set domain

  3. XM_025006782.2 → XP_024862550.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2ZIP3
    Conserved Domains (5) summary
    cd05759
    Location:134 → 215
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:387 → 484
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:23 → 112
    IG; Immunoglobulin
    pfam13895
    Location:223 → 300
    Ig_2; Immunoglobulin domain
    cl28434
    Location:304 → 385
    I-set; Immunoglobulin I-set domain

  4. XM_025006781.2 → XP_024862549.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2ZIP3
    Related
    ENSKMAP00010008294.1, ENSKMAT00010008676.1
    Conserved Domains (5) summary
    cd05759
    Location:134 → 215
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:387 → 484
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:23 → 112
    IG_like; Immunoglobulin like
    pfam13895
    Location:223 → 300
    Ig_2; Immunoglobulin domain
    cl28434
    Location:304 → 385
    I-set; Immunoglobulin I-set domain

  5. XM_025006779.2 → XP_024862547.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2ZG90
    Conserved Domains (5) summary
    cd05759
    Location:134 → 215
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:387 → 484
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:23 → 112
    IG; Immunoglobulin
    pfam13895
    Location:223 → 300
    Ig_2; Immunoglobulin domain
    cl28434
    Location:304 → 385
    I-set; Immunoglobulin I-set domain

  6. XM_017420104.3 → XP_017275593.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZG90
    Related
    ENSKMAP00010008277.1, ENSKMAT00010008659.1
    Conserved Domains (5) summary
    cd05759
    Location:134 → 215
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:387 → 484
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:23 → 112
    IG_like; Immunoglobulin like
    pfam13895
    Location:223 → 300
    Ig_2; Immunoglobulin domain
    cl28434
    Location:304 → 385
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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