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si:dkey-121b10.7 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108237095, updated on 10-Apr-2024

Summary

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Gene symbol
si:dkey-121b10.7
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6
See related
EnsemblRapid:ENSKMAG00010018177
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
zebrafish all
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Genomic context

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See si:dkey-121b10.7 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
2
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG17 NC_051446.1 (12006010..12025711)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094283.1 (132708..152376)

Linkage Group LG17 - NC_051446.1Genomic Context describing neighboring genes Neighboring gene rhomboid 5 homolog 1b (Drosophila) Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene methionine-R-sulfoxide reductase B1-A-like Neighboring gene meiosis specific with OB-fold Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051446.1 Reference ASM164957v2 Primary Assembly

    Range
    12006010..12025711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017418299.3 → XP_017273788.1  heparan sulfate glucosamine 3-O-sulfotransferase 6

    UniProtKB/TrEMBL
    A0A3Q3F6J2
    Related
    ENSKMAP00010039839.1, ENSKMAT00010041777.1
Nucleotide Protein
Heading Accession and Version

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