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LOC108235703 mitochondrial carnitine/acylcarnitine carrier protein [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108235703, updated on 10-Apr-2024

Summary

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Gene symbol
LOC108235703
Gene description
mitochondrial carnitine/acylcarnitine carrier protein
See related
EnsemblRapid:ENSKMAG00010013931 EnsemblRapid:ENSKMAG00010013947
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Also known as
slc25a20
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Genomic context

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See LOC108235703 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
21
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG4 NC_051433.1 (13384156..13398097)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094274.1 (3868228..3881605, complement)

Linkage Group LG4 - NC_051433.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112450493 Neighboring gene NCK-interacting protein with SH3 domain Neighboring gene msx2-interacting protein Neighboring gene uncharacterized LOC112450492 Neighboring gene filamin binding LIM protein 1 Neighboring gene transmembrane protein 82

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cAMP-dependent protein kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cAMP-dependent protein kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cAMP-dependent protein kinase type II-alpha regulatory subunit; mitochondrial carnitine/acylcarnitine carrier protein
Names
solute carrier family 25 member 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051433.1 Reference ASM164957v2 Primary Assembly

    Range
    13384156..13398097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017415859.3 → XP_017271348.1  cAMP-dependent protein kinase type II-alpha regulatory subunit isoform X3

  2. XM_017415858.3 → XP_017271347.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X2

    UniProtKB/TrEMBL
    A0A3Q3BRL6
    Related
    ENSKMAP00010030434.1, ENSKMAT00010031683.1

  3. XM_037975342.1 → XP_037831270.1  cAMP-dependent protein kinase type II-alpha regulatory subunit isoform X1

    UniProtKB/TrEMBL
    A0A3Q3BHN8, A0A3Q3BIS3
    Related
    ENSKMAP00010030535.1, ENSKMAT00010031785.1
    Conserved Domains (2) summary
    cd12103
    Location:4 → 44
    DD_RIIalpha_PKA; Dimerization/Docking domain of the Type II alpha Regulatory subunit of cAMP-dependent protein kinase
    cd00038
    Location:258 → 378
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein
Heading Accession and Version

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