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zgc:194242 uncharacterized LOC108235136 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108235136, updated on 10-Apr-2024

Summary

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Gene symbol
zgc:194242
Gene description
uncharacterized LOC108235136
See related
EnsemblRapid:ENSKMAG00010022449
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
zebrafish all
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Genomic context

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See zgc:194242 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
5
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG8 NC_051437.1 (16282738..16286130)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094272.1 (2432612..2436493)

Linkage Group LG8 - NC_051437.1Genomic Context describing neighboring genes Neighboring gene patatin-like phospholipase domain-containing protein 2 Neighboring gene ETS variant transcription factor 7 Neighboring gene leucine-rich repeat-containing G-protein coupled receptor 6 Neighboring gene ubiquitin-conjugating enzyme E2T (putative) Neighboring gene transcription factor Spi-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sterol 24-C-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized methyltransferase YdaC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051437.1 Reference ASM164957v2 Primary Assembly

    Range
    16282738..16286130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017414944.3 → XP_017270433.1  uncharacterized methyltransferase YdaC

    UniProtKB/TrEMBL
    A0A3Q3BBP6
    Conserved Domains (1) summary
    PRK08317
    Location:31 → 192
    PRK08317; hypothetical protein; Provisional

  2. XM_017414945.3 → XP_017270434.1  uncharacterized methyltransferase YdaC

    UniProtKB/TrEMBL
    A0A3Q3BBP6
    Conserved Domains (1) summary
    PRK08317
    Location:31 → 192
    PRK08317; hypothetical protein; Provisional

  3. XM_037977160.1 → XP_037833088.1  uncharacterized methyltransferase YdaC

    UniProtKB/TrEMBL
    A0A3Q3BBP6
    Related
    ENSKMAP00010048174.1, ENSKMAT00010051321.1
    Conserved Domains (1) summary
    PRK08317
    Location:31 → 192
    PRK08317; hypothetical protein; Provisional
Nucleotide Protein
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Gene LinkOut

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