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p3h2 prolyl 3-hydroxylase 2 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108230631, updated on 10-Apr-2024

Summary

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Gene symbol
p3h2
Gene description
prolyl 3-hydroxylase 2
See related
EnsemblRapid:ENSKMAG00010013864
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See p3h2 in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
16
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG24 NC_051453.1 (10135869..10181827)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094248.1 (566407..612843)

Linkage Group LG24 - NC_051453.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119616779 Neighboring gene claudin-19 Neighboring gene coiled-coil domain containing 181 Neighboring gene coproporphyrinogen oxidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051453.1 Reference ASM164957v2 Primary Assembly

    Range
    10135869..10181827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017407016.3 → XP_017262505.1  prolyl 3-hydroxylase 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3BJ37
    Related
    ENSKMAP00010030293.1, ENSKMAT00010031540.1

  2. XM_037974188.1 → XP_037830116.1  prolyl 3-hydroxylase 2 isoform X2

    Conserved Domains (1) summary
    smart00702
    Location:308 → 506
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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