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LOC108228886 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108228886, updated on 10-Apr-2024

Summary

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Gene symbol
LOC108228886
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
See related
EnsemblRapid:ENSKMAG00010019823
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC108228886 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
7
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG12 NC_051441.1 (957246..959622, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016095890.1 (7970..10397)

Linkage Group LG12 - NC_051441.1Genomic Context describing neighboring genes Neighboring gene ABI family, member 3a Neighboring gene uncharacterized LOC108228889 Neighboring gene interferon a3-like Neighboring gene DELTA-thalatoxin-Avl1a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051441.1 Reference ASM164957v2 Primary Assembly

    Range
    957246..959622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017404519.3 → XP_017260008.2  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

    Related
    ENSKMAP00010042826.1, ENSKMAT00010045325.1
    Conserved Domains (3) summary
    cd12366
    Location:16 → 96
    RRM1_RBM45; RNA recognition motif 1 (RRM1) found in RNA-binding protein 45 (RBM45) and similar proteins
    cd12367
    Location:112 → 185
    RRM2_RBM45; RNA recognition motif 2 (RRM2) found in RNA-binding protein 45 (RBM45) and similar proteins
    cl11394
    Location:323 → 593
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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