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b4galnt1a beta-1,4-N-acetyl-galactosaminyl transferase 1a [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108228644, updated on 10-Apr-2024

Summary

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Gene symbol
b4galnt1a
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 1a
See related
EnsemblRapid:ENSKMAG00010010742
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
zebrafish all
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Genomic context

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See b4galnt1a in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
13
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG8 NC_051437.1 (17648555..17661422, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016095658.1 (4696..9668)

Linkage Group LG8 - NC_051437.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112450469 Neighboring gene solute carrier family 26 member 10 Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a Neighboring gene tachykinin precursor 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051437.1 Reference ASM164957v2 Primary Assembly

    Range
    17648555..17661422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037977075.1 → XP_037833003.1  beta-1,4 N-acetylgalactosaminyltransferase 1a isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZG35
    Conserved Domains (1) summary
    pfam00535
    Location:281 → 405
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_037977077.1 → XP_037833005.1  beta-1,4 N-acetylgalactosaminyltransferase 1a isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZG35
    Related
    ENSKMAP00010023109.1, ENSKMAT00010024155.1
    Conserved Domains (1) summary
    pfam00535
    Location:281 → 405
    Glycos_transf_2; Glycosyl transferase family 2

  3. XM_037977076.1 → XP_037833004.1  beta-1,4 N-acetylgalactosaminyltransferase 1a isoform X1

    UniProtKB/TrEMBL
    A0A3Q2ZG35
    Conserved Domains (1) summary
    pfam00535
    Location:281 → 405
    Glycos_transf_2; Glycosyl transferase family 2

  4. XM_037977078.1 → XP_037833006.1  beta-1,4 N-acetylgalactosaminyltransferase 1a isoform X2

    UniProtKB/TrEMBL
    A0A3Q2ZG35
    Related
    ENSKMAP00010023118.1, ENSKMAT00010024166.1
    Conserved Domains (1) summary
    pfam00535
    Location:257 → 381
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
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