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LOC108227385 hydroxyproline O-arabinosyltransferase NOD3 [ Daucus carota subsp. sativus ]

Gene ID: 108227385, updated on 19-Jul-2024

Summary

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Gene symbol
LOC108227385
Gene description
hydroxyproline O-arabinosyltransferase NOD3
Locus tag
DCAR_002101
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108227385 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 1 NC_030381.2 (31220690..31226017, complement)
100 previous assembly ASM162521v1 (GCF_001625215.1) 1 NC_030381.1 (25332605..25338360, complement)

Chromosome 1 - NC_030381.2Genomic Context describing neighboring genes Neighboring gene calcium-dependent protein kinase 17 Neighboring gene rho GTPase-activating protein 7-like Neighboring gene signal peptide peptidase Neighboring gene pentatricopeptide repeat-containing protein At5g01110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase NOD3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030381.2 Reference DH1 v3.0 Primary Assembly

    Range
    31220690..31226017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064079773.1 → XP_063935843.1  hydroxyproline O-arabinosyltransferase NOD3

Nucleotide Protein
Heading Accession and Version

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