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LOC108226152 hydroxyproline O-galactosyltransferase GALT6 [ Daucus carota subsp. sativus ]

Gene ID: 108226152, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108226152
Gene description
hydroxyproline O-galactosyltransferase GALT6
Locus tag
DCAR_021546
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108226152 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 6 NC_030386.2 (26081484..26084458)
100 previous assembly ASM162521v1 (GCF_001625215.1) 6 NC_030386.1 (22029238..22031746)

Chromosome 6 - NC_030386.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108225111 Neighboring gene transcription factor MYB35 Neighboring gene hydroxyproline O-galactosyltransferase GALT6 Neighboring gene AAA-ATPase At3g28580

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030386.2 Reference DH1 v3.0 Primary Assembly

    Range
    26081484..26084458
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017401095.2 → XP_017256584.2  hydroxyproline O-galactosyltransferase GALT6

    UniProtKB/TrEMBL
    A0AAF1B630
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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