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LOC108224005 probable galacturonosyltransferase 10 [ Daucus carota subsp. sativus ]

Gene ID: 108224005, updated on 19-Jul-2024

Summary

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Gene symbol
LOC108224005
Gene description
probable galacturonosyltransferase 10
Locus tag
DCAR_019196
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108224005 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 5 NC_030385.2 (42464623..42467943, complement)
100 previous assembly ASM162521v1 (GCF_001625215.1) 5 NC_030385.1 (37013701..37017023, complement)

Chromosome 5 - NC_030385.2Genomic Context describing neighboring genes Neighboring gene beta-glucuronosyltransferase GlcAT14A Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene F-box protein At3g07870 Neighboring gene putative pentatricopeptide repeat-containing protein At1g03510

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030385.2 Reference DH1 v3.0 Primary Assembly

    Range
    42464623..42467943 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017398521.2 → XP_017254010.1  probable galacturonosyltransferase 10

    UniProtKB/TrEMBL
    A0A164ZHZ2, A0AAF0XA43
Nucleotide Protein
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