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LOC108222408 sucrose synthase 2 [ Daucus carota subsp. sativus ]

Gene ID: 108222408, updated on 19-Jul-2024

Summary

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Gene symbol
LOC108222408
Gene description
sucrose synthase 2
Locus tag
DCAR_002857
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108222408 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 1 NC_030381.2 (39012280..39027349, complement)
100 previous assembly ASM162521v1 (GCF_001625215.1) 1 NC_030381.1 (33487228..33502693, complement)

Chromosome 1 - NC_030381.2Genomic Context describing neighboring genes Neighboring gene endoglucanase 17 Neighboring gene sucrose synthase 2 Neighboring gene protein SEED AND ROOT HAIR PROTECTIVE PROTEIN Neighboring gene protein SEED AND ROOT HAIR PROTECTIVE PROTEIN

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030381.2 Reference DH1 v3.0 Primary Assembly

    Range
    39012280..39027349 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017396328.2 → XP_017251817.1  sucrose synthase 2

    UniProtKB/TrEMBL
    A0A166HFZ3, A0AAF1AHL7
Nucleotide Protein
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