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LOC108220121 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like [ Daucus carota subsp. sativus ]

Gene ID: 108220121, updated on 19-Jul-2024

Summary

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Gene symbol
LOC108220121
Gene description
9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
Locus tag
DCAR_019639
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
Also known as
NCED1; NCED-1
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Genomic context

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See LOC108220121 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 5 NC_030385.2 (46063065..46065090)
100 previous assembly ASM162521v1 (GCF_001625215.1) 5 NC_030385.1 (40713643..40715684)

Chromosome 5 - NC_030385.2Genomic Context describing neighboring genes Neighboring gene polyphenol oxidase, chloroplastic Neighboring gene polyadenylate-binding protein-interacting protein 9 Neighboring gene glycolate oxidase 1 Neighboring gene probable sugar phosphate/phosphate translocator At3g14410

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping. Just BJ, et al. Theor Appl Genet, 2007 Feb. PMID 17186217

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
Names
putative 9-cis epoxycarotenoid dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001329172.1 → NP_001316101.1  9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like

    Status: PROVISIONAL

    Source sequence(s)
    DQ192200
    UniProtKB/TrEMBL
    A0AAF0X8C2, Q2VEX0
    Conserved Domains (1) summary
    PLN02258
    Location:2 → 573
    PLN02258; 9-cis-epoxycarotenoid dioxygenase NCED

RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030385.2 Reference DH1 v3.0 Primary Assembly

    Range
    46063065..46065090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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