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LOC108219142 glucomannan 4-beta-mannosyltransferase 1 [ Daucus carota subsp. sativus ]

Gene ID: 108219142, updated on 19-Jul-2024

Summary

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Gene symbol
LOC108219142
Gene description
glucomannan 4-beta-mannosyltransferase 1
Locus tag
DCAR_014997
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108219142 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 4 NC_030384.2 (32185391..32188465)
100 previous assembly ASM162521v1 (GCF_001625215.1) 4 NC_030384.1 (16477719..16482261)

Chromosome 4 - NC_030384.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108216304 Neighboring gene transcription factor-like protein DPB Neighboring gene ras-related protein RABA4d Neighboring gene heavy metal-associated isoprenylated plant protein 6 Neighboring gene uncharacterized LOC108218526

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucomannan 4-beta-mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030384.2 Reference DH1 v3.0 Primary Assembly

    Range
    32185391..32188465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017392430.2 → XP_017247919.1  glucomannan 4-beta-mannosyltransferase 1

    UniProtKB/TrEMBL
    A0A165WT28
Nucleotide Protein
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