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LOC108215117 pectinesterase/pectinesterase inhibitor PPE8B [ Daucus carota subsp. sativus ]

Gene ID: 108215117, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108215117
Gene description
pectinesterase/pectinesterase inhibitor PPE8B
Locus tag
DCAR_011906
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108215117 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 3 NC_030383.2 (56060609..56063671)
100 previous assembly ASM162521v1 (GCF_001625215.1) 3 NC_030383.1 (41766038..41769167)

Chromosome 3 - NC_030383.2Genomic Context describing neighboring genes Neighboring gene peroxidase 4 Neighboring gene alpha-aminoadipic semialdehyde synthase Neighboring gene DNA repair protein RAD51 homolog Neighboring gene ribonuclease 3-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase/pectinesterase inhibitor PPE8B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030383.2 Reference DH1 v3.0 Primary Assembly

    Range
    56060609..56063671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017387466.2 → XP_017242955.1  pectinesterase/pectinesterase inhibitor PPE8B

    UniProtKB/TrEMBL
    A0A166C176
Nucleotide Protein
Heading Accession and Version

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