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LOC108205699 hydroxyproline O-arabinosyltransferase 1 [ Daucus carota subsp. sativus ]

Gene ID: 108205699, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108205699
Gene description
hydroxyproline O-arabinosyltransferase 1
Locus tag
DCAR_006201
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108205699 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 2 NC_030382.2 (38939974..38945478)
100 previous assembly ASM162521v1 (GCF_001625215.1) 2 NC_030382.1 (23064825..23070310)

Chromosome 2 - NC_030382.2Genomic Context describing neighboring genes Neighboring gene phenylalanine--tRNA ligase alpha subunit, cytoplasmic Neighboring gene protein HOTHEAD Neighboring gene uncharacterized LOC108205860 Neighboring gene small ribosomal subunit protein uS17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030382.2 Reference DH1 v3.0 Primary Assembly

    Range
    38939974..38945478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017375723.2 → XP_017231212.1  hydroxyproline O-arabinosyltransferase 1

    UniProtKB/TrEMBL
    A0A166DKS1, A0AAF0WDX8
Nucleotide Protein
Heading Accession and Version

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