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LOC108202652 rhamnogalacturonan I rhamnosyltransferase 1 [ Daucus carota subsp. sativus ]

Gene ID: 108202652, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108202652
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Locus tag
DCAR_030996
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108202652 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 9 NC_030389.2 (43933081..43938948)
100 previous assembly ASM162521v1 (GCF_001625215.1) 9 NC_030389.1 (31710183..31716131)

Chromosome 9 - NC_030389.2Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase VIK-like Neighboring gene transmembrane emp24 domain-containing protein p24delta9 Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene phosphate transporter PHO1 homolog 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030389.2 Reference DH1 v3.0 Primary Assembly

    Range
    43933081..43938948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017371147.2 → XP_017226636.1  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0AAF0Y0K6
Nucleotide Protein
Heading Accession and Version

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