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LOC108202604 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [ Daucus carota subsp. sativus ]

Gene ID: 108202604, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108202604
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
Locus tag
DCAR_030285
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108202604 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 9 NC_030389.2 (34107691..34113125, complement)
100 previous assembly ASM162521v1 (GCF_001625215.1) 9 NC_030389.1 (22929175..22934573, complement)

Chromosome 9 - NC_030389.2Genomic Context describing neighboring genes Neighboring gene probable RNA-dependent RNA polymerase 1 Neighboring gene MACPF domain-containing protein At1g14780 Neighboring gene caffeoyl-CoA O-methyltransferase Neighboring gene caffeoyl-CoA O-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030389.2 Reference DH1 v3.0 Primary Assembly

    Range
    34107691..34113125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017371077.2 → XP_017226566.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

    UniProtKB/TrEMBL
    A0A175YGB1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases