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LOC108199261 uncharacterized LOC108199261 [ Daucus carota subsp. sativus ]

Gene ID: 108199261, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108199261
Gene description
uncharacterized LOC108199261
Locus tag
DCAR_003843
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108199261 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 1 NC_030381.2 (47550097..47552658)
100 previous assembly ASM162521v1 (GCF_001625215.1) 1 NC_030381.1 (42397714..42400014)

Chromosome 1 - NC_030381.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g31430 Neighboring gene two-component response regulator ARR2 Neighboring gene probable phospholipid-transporting ATPase 4 Neighboring gene putative germin-like protein 2-1 Neighboring gene putative germin-like protein 2-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC108199261

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030381.2 Reference DH1 v3.0 Primary Assembly

    Range
    47550097..47552658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017366997.2 → XP_017222486.1  uncharacterized protein LOC108199261

    UniProtKB/TrEMBL
    A0A166IJ52

RNA

  1. XR_010288098.1 RNA Sequence

Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases