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LOC108198746 probable xyloglucan endotransglucosylase/hydrolase protein 26 [ Daucus carota subsp. sativus ]

Gene ID: 108198746, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108198746
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 26
Locus tag
DCAR_028681
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108198746 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 8 NC_030388.2 (2996972..2998525, complement)
100 previous assembly ASM162521v1 (GCF_001625215.1) 8 NC_030388.1 (2947930..2949252, complement)

Chromosome 8 - NC_030388.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108197953 Neighboring gene putative aldehyde oxidase Art an 7 Neighboring gene putative aldehyde oxidase Art an 7 Neighboring gene probable RNA methyltransferase At5g51130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030388.2 Reference DH1 v3.0 Primary Assembly

    Range
    2996972..2998525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017366525.2 → XP_017222014.1  probable xyloglucan endotransglucosylase/hydrolase protein 26

    UniProtKB/TrEMBL
    A0A175YKL2
Nucleotide Protein
Heading Accession and Version

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