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LOC108198583 callose synthase 12 [ Daucus carota subsp. sativus ]

Gene ID: 108198583, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108198583
Gene description
callose synthase 12
Locus tag
DCAR_026569
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108198583 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 8 NC_030388.2 (32077821..32083127)
100 previous assembly ASM162521v1 (GCF_001625215.1) 8 NC_030388.1 (30687866..30693166)

Chromosome 8 - NC_030388.2Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase E1 component subunit alpha, mitochondrial Neighboring gene probable galacturonosyltransferase-like 9 Neighboring gene small nucleolar RNA J33 Neighboring gene F-box/kelch-repeat protein At3g23880 Neighboring gene formin-like protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030388.2 Reference DH1 v3.0 Primary Assembly

    Range
    32077821..32083127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017366334.2 → XP_017221823.1  callose synthase 12

    UniProtKB/TrEMBL
    A0A175YQV3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases