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LOC108196723 putative pentatricopeptide repeat-containing protein At5g65820 [ Daucus carota subsp. sativus ]

Gene ID: 108196723, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108196723
Gene description
putative pentatricopeptide repeat-containing protein At5g65820
Locus tag
DCAR_025825
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108196723 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 7 NC_030387.2 (36691108..36698810)
100 previous assembly ASM162521v1 (GCF_001625215.1) 7 NC_030387.1 (30991135..30998866)

Chromosome 7 - NC_030387.2Genomic Context describing neighboring genes Neighboring gene growth-regulating factor 2 Neighboring gene receptor-like protein 44 Neighboring gene DUF21 domain-containing protein At2g14520 Neighboring gene probable pectin methylesterase CGR3 Neighboring gene 1-aminocyclopropane-1-carboxylate synthase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloroplast-nucleus signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondria-nucleus signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pentatricopeptide repeat-containing protein At5g65820

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030387.2 Reference DH1 v3.0 Primary Assembly

    Range
    36691108..36698810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017364135.2 → XP_017219624.1  putative pentatricopeptide repeat-containing protein At5g65820

    UniProtKB/TrEMBL
    A0A161ZQK6, A0AAF0XNC7

  2. XM_017364139.2 → XP_017219628.1  putative pentatricopeptide repeat-containing protein At5g65820

    UniProtKB/TrEMBL
    A0A161ZQK6, A0AAF0XNC7

  3. XM_064081505.1 → XP_063937575.1  putative pentatricopeptide repeat-containing protein At5g65820

    UniProtKB/TrEMBL
    A0AAF0XNC7

  4. XM_017364136.2 → XP_017219625.1  putative pentatricopeptide repeat-containing protein At5g65820

    UniProtKB/TrEMBL
    A0A161ZQK6, A0AAF0XNC7
Nucleotide Protein
Heading Accession and Version

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