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LOC108195343 probable pectinesterase/pectinesterase inhibitor 47 [ Daucus carota subsp. sativus ]

Gene ID: 108195343, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108195343
Gene description
probable pectinesterase/pectinesterase inhibitor 47
Locus tag
DCAR_024820
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108195343 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 7 NC_030387.2 (24450916..24454295, complement)
100 previous assembly ASM162521v1 (GCF_001625215.1) 7 NC_030387.1 (19683311..19686512, complement)

Chromosome 7 - NC_030387.2Genomic Context describing neighboring genes Neighboring gene GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase Neighboring gene protein EMB-1 Neighboring gene uncharacterized LOC135147710 Neighboring gene cysteine-rich receptor-like protein kinase 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase/pectinesterase inhibitor 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030387.2 Reference DH1 v3.0 Primary Assembly

    Range
    24450916..24454295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017362305.2 → XP_017217794.1  probable pectinesterase/pectinesterase inhibitor 47

    UniProtKB/TrEMBL
    A0AAF1B727
Nucleotide Protein
Heading Accession and Version

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