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LOC108195150 alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic [ Daucus carota subsp. sativus ]

Gene ID: 108195150, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108195150
Gene description
alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
Locus tag
DCAR_025414
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108195150 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 7 NC_030387.2 (32753165..32762385)
100 previous assembly ASM162521v1 (GCF_001625215.1) 7 NC_030387.1 (26953833..26963019)

Chromosome 7 - NC_030387.2Genomic Context describing neighboring genes Neighboring gene membrane-anchored ubiquitin-fold protein 2-like Neighboring gene probable galacturonosyltransferase 14 Neighboring gene uncharacterized LOC108195153 Neighboring gene UDP-glucose 6-dehydrogenase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030387.2 Reference DH1 v3.0 Primary Assembly

    Range
    32753165..32762385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017362101.2 → XP_017217590.1  alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0AAF0XN05
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases