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Gm46780 predicted gene, 46780 [ Mus musculus (house mouse) ]

Gene ID: 108168822, updated on 17-Aug-2024

Summary

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Official Symbol
Gm46780provided by MGI
Official Full Name
predicted gene, 46780provided by MGI
Primary source
MGI:MGI:5826417
See related
AllianceGenome:MGI:5826417
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 8.8) See more
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Genomic context

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See Gm46780 in Genome Data Viewer
Location:
2 H3; 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (173130176..173131923, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173288383..173290130, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_06613 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:173055154-173055337 Neighboring gene prostate transmembrane protein, androgen induced 1 Neighboring gene STARR-seq mESC enhancer starr_06615 Neighboring gene STARR-seq mESC enhancer starr_06620 Neighboring gene prostate transmembrane protein, androgen induced 1, opposite strand Neighboring gene RIKEN cDNA 1700039O17 gene Neighboring gene predicted gene, 36859 Neighboring gene STARR-seq mESC enhancer starr_06622 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:173175149-173175485 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:173175504-173175687 Neighboring gene predicted gene, 36911 Neighboring gene predicted gene, 52539

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    173130176..173131923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001783593.1 RNA Sequence

  2. XR_001783592.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version