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LOC108168713 uncharacterized LOC108168713 [ Mus musculus (house mouse) ]

Gene ID: 108168713, updated on 22-Oct-2024

Summary

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Gene symbol
LOC108168713
Gene description
uncharacterized LOC108168713
See related
Ensembl:ENSMUSG00000085804
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC108168713 in Genome Data Viewer
Location:
4 D2.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (130702535..130728650)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (130975217..131002192)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:130470071-130470326 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:130471621-130471838 Neighboring gene predicted gene, 38599 Neighboring gene STARR-seq mESC enhancer starr_11541 Neighboring gene lysosomal-associated protein transmembrane 5 Neighboring gene matrilin 1, cartilage matrix protein Neighboring gene RIKEN cDNA A930031H19 gene Neighboring gene STARR-seq mESC enhancer starr_11543 Neighboring gene predicted gene, 42317 Neighboring gene predicted gene, 35482

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_189599.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL669980

  2. NR_189600.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL669980
    Related
    ENSMUST00000314049.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    130702535..130728650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version