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LOC108150745 Hhip1 peak 1 Gli-inducible enhancer [ Mus musculus (house mouse) ]

Gene ID: 108150745, updated on 9-Aug-2024

Summary

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Gene symbol
LOC108150745
Gene description
Hhip1 peak 1 Gli-inducible enhancer
Gene type
biological region
Feature type(s)
protein_bind
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366682
Summary
This genomic region is located in an intron of the Hedgehog-interacting protein (Hhip) gene. It was predicted to be a Hedgehog (Hh)-responsive enhancer based on the presence of GLI family zinc finger binding motifs. It was shown to bind Gli1, and was validated as a functional Hh enhancer in a reporter gene assay. [provided by RefSeq, Jun 2016]
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Genomic context

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See LOC108150745 in Genome Data Viewer
Location:
8 C3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (80782363..80783105)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (80055734..80056476)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30494 Neighboring gene STARR-seq mESC enhancer starr_22024 Neighboring gene STARR-seq mESC enhancer starr_22025 Neighboring gene STARR-seq mESC enhancer starr_22026 Neighboring gene Hedgehog-interacting protein Neighboring gene predicted gene, 39206 Neighboring gene predicted gene, 53441 Neighboring gene STARR-seq mESC enhancer starr_22028 Neighboring gene zinc finger CCCH-type containing 15 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Vokes SA, et al. Development, 2007 May. PMID 17442700

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • Hedgehog-interacting protein Hh-responsive enhancer
  • regulatory region 366682

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_050888.1 

    Range
    101..843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    80782363..80783105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version