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Hcf Host cell factor [ Apis cerana (Asiatic honeybee) ]

Gene ID: 107996780, updated on 10-Oct-2024

Summary

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Gene symbol
Hcf
Gene description
Host cell factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis cerana
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Orthologs
fruit fly honey bee all
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Genomic context

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See Hcf in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
8
Annotation release Status Assembly LG Location
RS_2023_12 current AcerK_1.0 (GCF_029169275.1) LG2 NC_083853.1 (10343826..10356696)
101 previous assembly ACSNU-2.0 (GCF_001442555.1) Unplaced Scaffold NW_016019108.1 (1118930..1125813, complement)

Linkage Group LG2 - NC_083853.1Genomic Context describing neighboring genes Neighboring gene coatomer subunit alpha Neighboring gene uncharacterized LOC133665676 Neighboring gene Cysteine rich with EGF like domains Neighboring gene baculoviral IAP repeat-containing protein 2-like Neighboring gene Synapse-associated protein 47kD Neighboring gene kinesin-like protein KIF20B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1; host cell factor 2
Names
host cell factor C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029169275.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AcerK_1.0 Primary Assembly

Genomic

  1. NC_083853.1 Reference AcerK_1.0 Primary Assembly

    Range
    10343826..10356696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062071107.1 → XP_061927091.1  host cell factor 1 isoform X1

  2. XM_028666139.2 → XP_028521940.2  host cell factor 2 isoform X2

  3. XM_062071108.1 → XP_061927092.1  host cell factor 1 isoform X1

  4. XM_062071109.1 → XP_061927093.1  host cell factor 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases