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LOC107988048 heart enhancer 9 [ Homo sapiens (human) ]

Gene ID: 107988048, updated on 10-Oct-2023

Summary

Gene symbol
LOC107988048
Gene description
heart enhancer 9
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region is located in an intron of non-coding gene LOC101928978. It was predicted to be a heart enhancer based on a classifier that assesses the presence and/or absence of various features implicated in heart development, including transcription factor binding sites. It was validated as a functional heart enhancer in a zebrafish in vivo reporter assay. [provided by RefSeq, Jun 2016]
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Genomic context

Location:
4q21.23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (84253097..84253458)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (87583070..87583431)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (85174250..85174611)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85165003-85165976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85165977-85166950 Neighboring gene RNA, U6 small nuclear 774, pseudogene Neighboring gene PLAG1 like zinc finger 2 pseudogene Neighboring gene VISTA enhancer hs680 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85257789-85258318 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85258319-85258846 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:85263663-85264162 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:85283860-85284085 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85299952-85300636 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85306108-85306821 Neighboring gene NANOG hESC enhancer GRCh37_chr4:85334758-85335365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85402785-85403285 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85404850-85405688 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:85413525-85414416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85416773-85417273 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15544 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15545 Neighboring gene uncharacterized LOC102723338 Neighboring gene NK6 homeobox 1 Neighboring gene ribosomal protein L3 pseudogene 13

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_050809.1 

    Range
    101..462
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    84253097..84253458
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    87583070..87583431
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    GenBank, FASTA, Sequence Viewer (Graphics)