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LOC107987292 putative proline-rich protein 21 [ Homo sapiens (human) ]

Gene ID: 107987292, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107987292
Gene description
putative proline-rich protein 21
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Note: GeneID:107987292 is on a scaffold that is thought to be a false duplication and thus this gene is possibly redundant with another GeneID. [10 Jun 2021]
Expression
Biased expression in appendix (RPKM 4.0), lymph node (RPKM 3.7) and 13 other tissues See more
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Genomic context

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See LOC107987292 in Genome Data Viewer
Location:
21p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (5083817..5086730, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (42531042..42542908)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ICOS ligand Neighboring gene uncharacterized LOC124905052 Neighboring gene uncharacterized LOC124900468 Neighboring gene uncharacterized CH507-9B2.8 Neighboring gene uncharacterized LOC101928576 Neighboring gene glutamine amidotransferase class 1 domain containing 3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General protein information

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Preferred Names
putative proline-rich protein 21; uncharacterized protein LOC107987292

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    5083817..5086730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067921.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    42531042..42542908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047447033.1 → XP_047302989.1  uncharacterized protein LOC107987292 isoform X1

  2. XM_047447034.1 → XP_047302990.1  putative proline-rich protein 21 isoform X2

Nucleotide Protein
Heading Accession and Version

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