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LOC107987101 uncharacterized LOC107987101 [ Homo sapiens (human) ]

Gene ID: 107987101, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107987101
Gene description
uncharacterized LOC107987101
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 1.5) and brain (RPKM 0.1) See more
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Genomic context

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See LOC107987101 in Genome Data Viewer
Location:
9q22.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (94690391..94700159, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (106859700..106869474, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97320892-97321392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97349793-97350294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97350295-97350794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:97353573-97354115 Neighboring gene NANOG hESC enhancer GRCh37_chr9:97370327-97370828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97372257-97372756 Neighboring gene prostate cancer associated transcript 7 Neighboring gene fructose-bisphosphatase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20057 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28632 Neighboring gene Sharpr-MPRA regulatory region 4124 Neighboring gene fructose-bisphosphatase 1 Neighboring gene uncharacterized LOC124902219 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:97482699-97483898 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:97488708-97489250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97506143-97506644 Neighboring gene aminopeptidase O (putative) Neighboring gene uncharacterized LOC124902220 Neighboring gene microRNA 2278

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    94690391..94700159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746846.1 RNA Sequence

  2. XR_001746845.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    106859700..106869474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079756.1 RNA Sequence

  2. XR_007079755.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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