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LOC107987097 uncharacterized LOC107987097 [ Homo sapiens (human) ]

Gene ID: 107987097, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107987097
Gene description
uncharacterized LOC107987097
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107987097 in Genome Data Viewer
Location:
9q22.31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (93431411..93439282, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (105598838..105606700, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 120A2, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:96109682-96110628 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:96112805-96113334 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:96114925-96115454 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:96115455-96115984 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_109877 Neighboring gene RNA, U6 small nuclear 829, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:96213447-96213996 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20045 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20046 Neighboring gene family with sequence similarity 120 member A opposite strand Neighboring gene Sharpr-MPRA regulatory region 4009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28621 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96222857-96223356 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96228924-96229490 Neighboring gene family with sequence similarity 120 member A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28623 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:96244807-96245307 Neighboring gene MIA SH3 domain ER export factor 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    93431411..93439282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061670.1 RNA Sequence

  2. XR_001746841.2 RNA Sequence

  3. XR_007061669.1 RNA Sequence

  4. XR_001746840.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    105598838..105606700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079747.1 RNA Sequence

  2. XR_007079746.1 RNA Sequence

  3. XR_007079745.1 RNA Sequence

  4. XR_007079743.1 RNA Sequence

  5. XR_007079744.1 RNA Sequence

  6. XR_007079742.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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