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LOC107987032 uncharacterized LOC107987032 [ Homo sapiens (human) ]

Gene ID: 107987032, updated on 26-Oct-2024

Summary

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Gene symbol
LOC107987032
Gene description
uncharacterized LOC107987032
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107987032 in Genome Data Viewer
Location:
9q22.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (89801727..89803213, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (101966879..101968365, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376139 Neighboring gene NANOG hESC enhancer GRCh37_chr9:92226260-92226808 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92229340-92229881 Neighboring gene growth arrest and DNA damage inducible gamma Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92254441-92255010 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92263300-92263809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92269903-92270434 Neighboring gene long intergenic non-protein coding RNA 3062 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92276688-92277224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92277225-92277762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92277763-92278299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92290615-92291265 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92291266-92291915 Neighboring gene VISTA enhancer hs1339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92300659-92301230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20017 Neighboring gene uncharacterized LOC105376140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92313261-92313762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92313763-92314262 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:92316238-92317437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92327190-92327690 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:92332512-92332723 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92450186-92450697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92458811-92459312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92459313-92459812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92493341-92493841 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:92494129-92494294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28558 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28559 Neighboring gene uncharacterized LOC101927823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28561 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108797 Neighboring gene uncharacterized LOC101927847 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28562

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    89801727..89803213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746572.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    101966879..101968365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079722.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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