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LOC107986907 uncharacterized LOC107986907 [ Homo sapiens (human) ]

Gene ID: 107986907, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986907
Gene description
uncharacterized LOC107986907
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986907 in Genome Data Viewer
Location:
8p23.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (5113280..5145812, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (4866056..4899718, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene CUB and Sushi multiple domains 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:4712232-4712805 Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:4985613-4986121 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:5018868-5019368 Neighboring gene Sharpr-MPRA regulatory region 617 Neighboring gene ribosomal L24 domain containing 1 pseudogene 7 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_103308 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:5070081-5070596 Neighboring gene RNA, 7SL, cytoplasmic 318, pseudogene Neighboring gene Sharpr-MPRA regulatory region 1718 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:5293944-5294514 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:5311453-5312652 Neighboring gene uncharacterized LOC105377793 Neighboring gene ribosomal protein L23a pseudogene 54

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    5113280..5145812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745763.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    4866056..4899718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078576.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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