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CZ1P-ASNS CZ1P-ASNS readthrough [ Homo sapiens (human) ]

Gene ID: 107986827, updated on 10-Oct-2023

Summary

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Gene symbol
CZ1P-ASNS
Gene description
CZ1P-ASNS readthrough
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring readthrough transcription between the neighboring CCZ1P (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated pseudogene) and ASNS (asparagine synthetase) genes on chromosome 7. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jun 2017]
Expression
Ubiquitous expression in skin (RPKM 1.5), spleen (RPKM 1.0) and 23 other tissues See more
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Genomic context

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Location:
7q21.3
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (97852117..97972358, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (99082171..99202450, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (97481429..97601670, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:97243215-97243758 Neighboring gene RN7SK pseudogene 104 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:97360557-97361756 Neighboring gene tachykinin precursor 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:97407865-97408366 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:97475873-97476053 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18386 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:97501601-97502316 Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26303 Neighboring gene RPS3A pseudogene 29 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:97586255-97586755 Neighboring gene CCZ1P-OR7E38P readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18389 Neighboring gene olfactory receptor family 7 subfamily E member 7 pseudogene Neighboring gene microRNA 5692a-1 Neighboring gene microRNA 5692c-2 Neighboring gene olfactory receptor family 7 subfamily E member 38 pseudogene Neighboring gene CCZ1 pseudogene 1 Neighboring gene RNA, 7SL, cytoplasmic 478, pseudogene Neighboring gene oncomodulin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Readthrough CZ1P-ASNS

Included genes: ASNS, CCZ1P1

Clone Names

  • FLJ43176, FLJ99734

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147989.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004967, AC005326, AC079781, BC030024

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    97852117..97972358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    99082171..99202450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013725.1: Suppressed sequence

    Description
    NM_001013725.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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