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LOC107986448 uncharacterized LOC107986448 [ Homo sapiens (human) ]

Gene ID: 107986448, updated on 22-Oct-2024

Summary

Gene symbol
LOC107986448
Gene description
uncharacterized LOC107986448
See related
Ensembl:ENSG00000253807
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC107986448 in Genome Data Viewer
Location:
5q23.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (124306251..124317861, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (124822824..124834405, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1170 Neighboring gene uncharacterized LOC101927397 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:123565792-123566567 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:123592390-123593589 Neighboring gene high mobility group box 1 pseudogene 29 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:123599306-123600246 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:123625493-123626456 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:123644150-123645142 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80867 Neighboring gene uncharacterized LOC105379155 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16277 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:123777990-123778496 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:123804163-123805004 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:123832600-123833191 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:123833192-123833782 Neighboring gene NANOG hESC enhancer GRCh37_chr5:123837876-123838461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23009 Neighboring gene NANOG hESC enhancer GRCh37_chr5:123890213-123891101 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:123935182-123935396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23011 Neighboring gene Sharpr-MPRA regulatory region 9682 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:123984206-123984714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23012 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:123995996-123996689 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:123998129-123998646 Neighboring gene zinc finger protein 608 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:124044787-124045526 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:124083572-124084570 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:124082573-124083571 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:124079931-124080624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23013 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:124077846-124078540 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:124074341-124074948 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:124073123-124073732 Neighboring gene NANOG hESC enhancer GRCh37_chr5:124068918-124069490

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    124306251..124317861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742871.2 RNA Sequence

    Related
    ENST00000750082.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    124822824..124834405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076327.1 RNA Sequence