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LOC107986405 uncharacterized LOC107986405 [ Homo sapiens (human) ]

Gene ID: 107986405, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107986405
Gene description
uncharacterized LOC107986405
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986405 in Genome Data Viewer
Location:
5p15.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (9930689..9964932, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (9870493..9904748, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2112 Neighboring gene taste 2 receptor member 1 Neighboring gene uncharacterized LOC105374649 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:9774748-9775340 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:9775483-9776682 Neighboring gene RNA, 5S ribosomal pseudogene 177 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:9832028-9832528 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:9832529-9833029 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:9833753-9834254 Neighboring gene long intergenic non-protein coding RNA 2221 Neighboring gene NANOG hESC enhancer GRCh37_chr5:9895310-9895811 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:9944391-9944892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:9944893-9945392 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22351 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15911 Neighboring gene uncharacterized LOC124900939 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:10101715-10102617 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:10102618-10103520 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:10108167-10108948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15912 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:10127135-10127785 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:10140102-10140735 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:10157229-10157880 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15913 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15914 Neighboring gene ATP synthase c subunit lysine N-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    9930689..9964932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742600.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    9870493..9904748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075474.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases