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LINC02473 long intergenic non-protein coding RNA 2473 [ Homo sapiens (human) ]

Gene ID: 107986266, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02473provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2473provided by HGNC
Primary source
HGNC:HGNC:53412
See related
Ensembl:ENSG00000261121 AllianceGenome:HGNC:53412
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.0), brain (RPKM 0.2) and 1 other tissue See more
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Genomic context

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See LINC02473 in Genome Data Viewer
Location:
4p15.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (24659900..24671568)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (24641635..24653320)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900682 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:24599261-24600460 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:24659537-24660178 Neighboring gene ATP synthase membrane subunit g pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chr4:24728949-24729687 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:24731920-24732420 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:24745447-24745979 Neighboring gene NANOG hESC enhancer GRCh37_chr4:24749171-24749716 Neighboring gene uncharacterized LOC124900683 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 65

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183976.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114777
    Related
    ENST00000569621.1

  2. NR_183977.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114777

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    24659900..24671568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    24641635..24653320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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