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LOC107986182 uncharacterized LOC107986182 [ Homo sapiens (human) ]

Gene ID: 107986182, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986182
Gene description
uncharacterized LOC107986182
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986182 in Genome Data Viewer
Location:
4p15.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (13832875..13936498)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (13810295..13916265)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:13641327-13641828 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:13641829-13642328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:13666052-13666590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:13666591-13667128 Neighboring gene ribosomal protein L32 pseudogene 12 Neighboring gene long intergenic non-protein coding RNA 1182 Neighboring gene uncharacterized LOC101929048 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:13893421-13894620 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:13906696-13907895 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:13908590-13909789 Neighboring gene C9orf78 pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 1085 Neighboring gene Kruppel like factor 17 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    13832875..13936498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741382.2 RNA Sequence

  2. XR_007058056.1 RNA Sequence

  3. XR_001741384.2 RNA Sequence

  4. XR_007058057.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    13810295..13916265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074480.1 RNA Sequence

  2. XR_007074481.1 RNA Sequence

  3. XR_007074482.1 RNA Sequence

  4. XR_007074483.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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