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LOC107985830 uncharacterized LOC107985830 [ Homo sapiens (human) ]

Gene ID: 107985830, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985830
Gene description
uncharacterized LOC107985830
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985830 in Genome Data Viewer
Location:
2q31.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (176051610..176055901)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (176539720..176544011)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene lunapark, ER junction formation factor Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16788 Neighboring gene thymosin beta-4-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:176937398-176937898 Neighboring gene VISTA enhancer hs246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:176943643-176944284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:176947449-176948064 Neighboring gene NUP98-HOXD13 recombination region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:176950515-176951339 Neighboring gene even-skipped homeobox 2 Neighboring gene homeobox D13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    176051610..176055901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739224.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    176539720..176544011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072669.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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